GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| THCA | cis | rs7267979 | 1 | rs6083813 | chr20:25337671 | PYGB | chr20:25228706-25278647:+ | 0.16 | 4.03 | 6.46E-5 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083825 | chr20:25366424 | ENTPD6 | chr20:25176339-25207360:+ | 0.32 | 7.23 | 1.88E-12 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083825 | chr20:25366424 | FAM182A | chr20:26035250-26067552:+ | 0.19 | 3.49 | 0.000536 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083825 | chr20:25366424 | FAM182B | chr20:25744102-25848786:- | -0.26 | -5.4 | 1.06E-7 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083825 | chr20:25366424 | NINL | chr20:25433338-25566153:- | 0.33 | 6.9 | 1.7E-11 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083825 | chr20:25366424 | PYGB | chr20:25228706-25278647:+ | 0.16 | 4.03 | 6.5E-5 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083828 | chr20:25369918 | ENTPD6 | chr20:25176339-25207360:+ | 0.32 | 7.41 | 5.68E-13 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083828 | chr20:25369918 | FAM182A | chr20:26035250-26067552:+ | 0.19 | 3.54 | 0.000434 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083828 | chr20:25369918 | FAM182B | chr20:25744102-25848786:- | -0.25 | -5.37 | 1.22E-7 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083828 | chr20:25369918 | NINL | chr20:25433338-25566153:- | 0.34 | 7.07 | 5.7E-12 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083828 | chr20:25369918 | PYGB | chr20:25228706-25278647:+ | 0.16 | 4.02 | 6.78E-5 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083844 | chr20:25386832 | ENTPD6 | chr20:25176339-25207360:+ | 0.31 | 7.01 | 8.3E-12 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083844 | chr20:25386832 | FAM182B | chr20:25744102-25848786:- | -0.26 | -5.44 | 8.53E-8 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083844 | chr20:25386832 | NINL | chr20:25433338-25566153:- | 0.33 | 6.78 | 3.5E-11 | Liver enzyme levels (alkaline phosphatase) |
| THCA | cis | rs7267979 | 1 | rs6083844 | chr20:25386832 | PYGB | chr20:25228706-25278647:+ | 0.15 | 3.85 | 0.000134 | Liver enzyme levels (alkaline phosphatase) |